| AIDS Community Research Initiative of AmericaEIN 13-3632234 | Health | NY | $2,741,109Small | 65.81 |
| AIDS Vaccine Advocacy CoalitionEIN 94-3240841 | Health | NY | $13,344,707Mid-sized | 93.98 |
| Alzheimer's Foundation of AmericaEIN 91-1792864 | Health | NY | $6,562,695Mid-sized | 95.73 |
| American Committee for Shaare Zedek Medical Center In JerusalemEIN 13-5645878 | Health | NY | $20,966,439Large | 94.74 |
| American Committee for the Weizmann Institute of ScienceEIN 13-1623886 | Health | NY | $83,439,000Large | 90.96 |
| American Federation for Aging ResearchEIN 13-3045282 | Health | NY | $5,980,117Mid-sized | 92.92 |
| American Foundation for Suicide PreventionEIN 13-3393329 | Health | NY | $23,219,954Large | 89.12 |
| American Friends of ALYN HospitalEIN 13-6100833 | Health | NY | $3,113,775Small | 86.75 |
| American Friends of Magen David AdomEIN 13-1790719 | Health | NY | $34,622,656Large | 85.50 |
| American Italian Cancer FoundationEIN 13-3035711 | Health | NY | $1,688,237Small | 91.63 |
| American Liver FoundationEIN 36-2883000 | Health | NY | $8,921,259Mid-sized | 87.43 |
| American Skin AssociationEIN 13-3401320 | Health | NY | $1,405,914Small | 92.92 |
| Arthur Ashe Institute for Urban HealthEIN 11-3185372 | Health | NY | $2,988,538Small | 90.43 |
| Autism SpeaksEIN 20-2329938 | Health | NY | $42,861,302Large | 80.10 |
| Bonei OlamEIN 11-3473757 | Health | NY | $9,800,311Mid-sized | 85.03 |
| Brain & Behavior Research FoundationEIN 31-1020010 | Health | NY | $17,729,428Large | 90.71 |
| Breast Cancer Research FoundationEIN 13-3727250 | Health | NY | $76,886,163Large | 90.48 |
| Broadway Cares/Equity Fights AIDSEIN 13-3458820 | Health | NY | $22,604,203Large | 81.84 |
| Brooklyn Teen ChallengeEIN 11-2510315 | Health | NY | $1,436,310Small | 78.31 |
| Camp Good Days and Special TimesEIN 22-2329654 | Health | NY | $5,165,207Mid-sized | 92.22 |
| Cancer Research InstituteEIN 13-1837442 | Health | NY | $24,672,872Large | 92.18 |
| Cerebral Palsy FoundationEIN 13-6093337 | Health | NY | $1,808,965Small | 82.51 |
| Child Mind InstituteEIN 80-0478843 | Health | NY | $14,159,225Large | 91.25 |
| Children of Bellevue, Inc.EIN 13-1679615 | Health | NY | $1,304,234Small | 81.18 |
| Children's Brain Tumor FoundationEIN 13-3512123 | Health | NY | $1,373,907Small | 74.42 |
| Children's Cancer & Blood FoundationEIN 13-6019222 | Health | NY | $1,119,942Small | 78.78 |
| Children's Leukemia Research AssociationEIN 11-2106778 | Health | NY | $2,362,556Small | 25.53 |
| Children's Tumor FoundationEIN 13-2298956 | Health | NY | $12,638,073Mid-sized | 85.15 |
| Crohn's & Colitis Foundation EIN 13-6193105 | Health | NY | $75,664,404Large | 88.16 |
| CurePSPEIN 52-1704978 | Health | NY | $2,357,223Small | 80.65 |
| Damon Runyon Cancer Research FoundationEIN 13-1933825 | Health | NY | $19,596,662Large | 94.78 |
| DIFFAEIN 13-3224150 | Health | NY | $2,754,888Small | 79.35 |
| Drugs for Neglected Diseases Initiative North AmericaEIN 20-8774179 | Health | NY | $4,091,229Mid-sized | 84.44 |
| Dysautonomia FoundationEIN 13-6145280 | Health | NY | $2,427,386Small | 85.38 |
| Dystrophic Epidermolysis Bullosa Research Association of America (debra of America)EIN 11-2519726 | Health | NY | $1,416,573Small | 93.82 |
| Elton John AIDS FoundationEIN 58-2033460 | Health | NY | $10,028,552Mid-sized | 95.12 |
| enCourage Kids FoundationEIN 13-3442216 | Health | NY | $3,110,680Small | 89.25 |
| Ezer MizionEIN 13-3660421 | Health | NY | $3,532,701Mid-sized | 80.91 |
| Fisher Center for Alzheimer's Research FoundationEIN 13-3859563 | Health | NY | $4,628,453Mid-sized | 100.00 |
| Flatbush Volunteers of HatzolohEIN 13-3213138 | Health | NY | $1,354,561Small | 73.69 |
| Foundation of Orthopedics and Complex Spine, Inc. (FOCOS)EIN 13-4047356 | Health | NY | $3,190,491Small | 81.64 |
| Freedom InstituteEIN 13-2877912 | Health | NY | $4,742,217Mid-sized | 80.08 |
| Friends of KarenEIN 14-1612290 | Health | NY | $3,836,664Mid-sized | 89.74 |
| Friends of United Hatzalah of IsraelEIN 11-3533002 | Health | NY | $21,197,988Large | 93.91 |
| Gay Men's Health CrisisEIN 13-3130146 | Health | NY | $26,881,078Large | 80.42 |
| Gilda's Club New York CityEIN 13-4046652 | Health | NY | $2,235,834Small | 83.36 |
| Gilda's Club WestchesterEIN 13-3939823 | Health | NY | $1,135,742Small | 79.48 |
| Hearing Health FoundationEIN 13-1882107 | Health | NY | $3,570,773Mid-sized | 98.23 |
| Hereditary Disease FoundationEIN 23-7376197 | Health | NY | $2,547,618Small | 94.62 |
| Hope & Heroes Children's Cancer FundEIN 74-3066193 | Health | NY | $2,627,367Small | 89.39 |
| Hunter's Hope FoundationEIN 16-1552315 | Health | NY | $868,913Small | 84.32 |
| Huntington's Disease Society of AmericaEIN 13-3349872 | Health | NY | $8,627,132Mid-sized | 92.78 |
| International AIDS Vaccine InitiativeEIN 13-3870223 | Health | NY | $85,397,465Large | 92.92 |
| International Planned Parenthood Federation/Western Hemisphere RegionEIN 13-1845455 | Health | NY | $29,392,929Large | 93.32 |
| Israel Cancer Research FundEIN 51-0181215 | Health | NY | $4,379,201Mid-sized | 80.22 |
| Jeffrey Modell FoundationEIN 13-3380237 | Health | NY | $6,352,516Mid-sized | 93.94 |
| Just One Life/Nefesh Achat B'YisraelEIN 13-3533863 | Health | NY | $976,900Small | 59.56 |
| Long Island Alzheimer's FoundationEIN 11-2926958 | Health | NY | $1,489,593Small | 91.39 |
| Long Island Council on Alcoholism & Drug DependenceEIN 11-1833092 | Health | NY | $1,457,603Small | 83.38 |
| Lung Cancer Research FoundationEIN 14-1935776 | Health | NY | $4,554,246Mid-sized | 92.20 |